Chemical Physics, 2004, V 307, N 2-3, 27 December.

      
 1.   
 Preface  ; EDITORIAL
 Martin Gruebele
 Pages 97-98 

2.   
 Guiding the search for a protein's
 maximum rate of folding  ; 
 Yongjin Zhu, Xiaoran Fu, Ting Wang,
 Atsuo Tamura, Shoji Takada, 
 Jeffery G. Saven and Feng Gai
 Pages 99-109
 
3.   
 Water-mediated interaction at 
 a protein;protein interface  ; 
 Teikichi Ikura, Yoshiaki Urakubo
 and Nobutoshi Ito
 Pages 111-119 
 
4.   
 Coupling of functioning and folding:
 photoactive yellow protein as 
 an example system  ; 
 Kazuhito Itoh and Masaki Sasai
 Pages 121-127
 
5.   
 Kinetics of -helix formation as diffusion
 on a one-dimensional free energy surface  ; 
 Urmi Doshi and Victor Munoz
 Pages 129-136
 
6.   
 Noise reduction in single-molecule
 fluorescence trajectories of 
 folding proteins  ; 
Gilad Haran
 Pages 137-145

7.   
 Molecular dynamics simulations of 
 substrate channeling through an ; barrel protein  ; 
 Rommie Amaro and Zaida Luthey-Schulten
 Pages 147-155 
 
8.   
 Protein folding mechanisms and energy
 landscape of src SH3 domain studied
 by a structure prediction toolbox  ; 
 George Chikenji, Yoshimi Fujitsuka
 and Shoji Takada
 Pages 157-162 
 
9.   
 Combinatorial modeling of protein
 folding kinetics: free energy profiles and rates  ; 
 Eric R. Henry and William A. Eaton
 Pages 163-185 
 
10.   
 Exploring the effects of hydrogen bonding
 and hydrophobic interactions on the 
 foldability and cooperativity of helical 
 proteins using a simplified atomic model  ; 
 Michael Knott and Hue Sun Chan
 Pages 187-199 
11.   
 Rapid photochemical triggering of protein
 unfolding in a nondenaturing environment  ; 
 Ronald S. Rock, Kirk C. Hansen, 
 Randy W. Larsen and Sunney I. Chan
 Pages 201-208 
 
12.   
 Intrachain diffusion in a protein loop 
 fragment from carp parvalbumin  ; 
 Florian Krieger, Beat Fierz, 
 Fabian Axthelm, Karin Joder, 
 Dominique Meyer and Thomas Kiefhaber
 Pages 209-215 
 
13.   
 A similarity measure for partially folded
 proteins: application to unfolded and 
 native-like conformational fluctuations  ; 
 Edgar Larios, Wei Y. Yang, K. Schulten
 and M. Gruebele
 Pages 217-225 
 
14.   
 Time-resolved FTIR studies provide 
 activation free energy, activation enthalpy
 and activation entropy for GTPase reactions  ; 
 Carsten Kotting and Klaus Gerwert
 Pages 227-232 
 
15.   
 Mapping the position of the transition
 state in the folding of a small α/β 
 protein, POIA1  ; 
 Shuhei Tanaka, Shuichi Kojima and Atsuo Tamura
 Pages 233-242
 
16.   
 Internal friction in the ultrafast folding
 of the tryptophan cage  ; 
 Linlin Qiu and Stephen J. Hagen
 Pages 243-249
 
17.   
 Progressing from folding trajectories
 to transition state ensemble in proteins  ; 
 D.K. Klimov and D. Thirumalai
 Pages 251-258 
 
18.   
 Scrutinizing the squeezed exponential kinetics
 observed in the folding simulation of an 
 off-lattice Go-like protein model  ; 
 Hironori K. Nakamura, Masaki Sasai
 and Mitsunori Takano
 Pages 259-267 

19.   
 Secondary-structure preferences of
 force fields for proteins evaluated 
 by generalized-ensemble simulations  ; 
 Takao Yoda, Yuji Sugita and Yuko Okamoto
 Pages 269-283 
 
20.   
 Towards measurement of the time-resolved
 heat release of protein conformation dynamics  ; 
 Jason Puchalla, Daniel Adamek and Robert Austin
 Pages 285-290 
 
21.   
 Author index  ; 
Pages 291-293 
 
22.   
 Subject index  ; 
Pages 295-302 
 
23.   
 Editorial board  ; 
Page CO2